I. Introduction to Unix - Learn about the Unix philosophy.

II. Basic Unix - Learn to use the basic commands (cd, ls, ll, mkdir, mv, cp, pwd, htop, screen, grep, globbing, less, head, tail, cat, cut, sort, uniq, paste, join, pipes).

III. Advanced Unix - Learn basics of awk, sed, regular expressions, shell scripting, shell variables, parallel, subshells.

IV. Introduction to Genomics - Learn how ‘genomes’ are made.

V. Data visualization - Learn how to format your data for effective visualization and how to use RStudio, tidyr, dplyr and ggplot2 to explore your data visually.

VI. Read quality assessment - Learn how to use Unix to explore FASTQ files, calculate some basic statistics, assess read quality, filter out low-quality reads.

VII. Genome assembly - Learn how to do a (small) genome assembly.

VIII. Variant calling - Learn how to use the original NGS reads and a genome assembly to call variants.

IX. Standard annotation formats - Learn how information on genes, variants and genome properties is stored (GFF, VCF, BED formats) and how to obtain quick summaries with impressive speed (bedtools, vcftools, etc.)

X. A lot of practice.