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MM calculations
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Mgr. Filip Šebesta Ph.D.
Academic staff at Faculty of Mathematics and Physics
14 publications
Publications
publication
QM and QM/MM umbrella sampling MD study of the formation of Hg(II)-thymine bond: Model for evaluation of the reaction energy profiles in solutions with constant pH
2020 |
Faculty of Mathematics and Physics
publication
Tryptophan to Tryptophan Hole Hopping in an Azurin Construct
2023 |
Faculty of Mathematics and Physics
publication
A new grand-canonical potential for the thermodynamic description of the reactions in solutions with constant pH
2021 |
Faculty of Mathematics and Physics, Central Library of Charles University
publication
Redox Potentials for Tetraplatin, Satraplatin, Its Derivatives, and Ascorbic Acid: A Computational Study
2018 |
Faculty of Mathematics and Physics
publication
Interactions of Ascorbic Acid with Satraplatin and its trans Analog JM576: DFT Computational Study
2018 |
Faculty of Mathematics and Physics
publication
Protein environment affects the water-tryptophan binding mode. MD, QM/MM, and NMR studies of engrailed homeodomain mutants
2018 |
Faculty of Mathematics and Physics
publication
The Influence of the Metal Cations and Microhydration on the Reaction Trajectory of the N3 <-> O2 Thymine Proton Transfer: Quantum Mechanical Study
2017 |
Faculty of Mathematics and Physics
publication
Study on electronic properties, thermodynamic and kinetic parameters of the selected platinum(II) derivatives interacting with guanine
2017 |
Faculty of Mathematics and Physics
publication
Side Reactions with an Equilibrium Constraint: Detailed Mechanism of the Substitution Reaction of Tetraplatin with dGMP as a Starting Step of the Platinum(IV) Reduction Process
2017 |
Faculty of Mathematics and Physics
publication
Reduction Process of Tetraplatin in the Presence of Deoxyguanosine Monophosphate (dGMP): A Computational DFT Study
2016 |
Faculty of Mathematics and Physics
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