- Social Pedagogy🇨🇿 Bc. | Hussite Theological Faculty
- Geography for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Chemistry for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Geology for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Biology for Teacher Education with double curriculum study Chemistry for Teacher Education🇨🇿 Bc. | Faculty of Science
- Biology for Teacher Education with double curriculum study Geography for Teacher Education🇨🇿 Bc. | Faculty of Science
- Biology for Teacher Education with double curriculum study Physics for Teacher Education🇨🇿 Bc. | Faculty of Science
- Ancient Egypt and the Near East with specialisation in Egyptology🇨🇿 NMgr. | Faculty of Arts
- Hydrology and Hydrogeology🇨🇿 Bc. | Faculty of Science
- Immunology🇨🇿 NMgr. | Faculty of Science
- Humanities and Social Sciences🇨🇿 Bc. | Faculty of Humanities
- Anthropological studies🇨🇿 NMgr. | Faculty of Humanities
- Anthropological studies with specialisation in Sociocultural anthropology🇨🇿 NMgr. | Faculty of Humanities
- Musicology +1🇨🇿 NMgr. | Faculty of Arts
- Reproduction and Developmental Biology🇨🇿 NMgr. | Faculty of Science
- Sociology🇨🇿 NMgr. | Faculty of Arts
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Sociology🇨🇿 Bc. | Faculty of Arts