- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies +1🇬🇧 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- Classical Archaeology🇨🇿 NMgr. | Faculty of Arts
- Greek and Latin Studies with specialisation in History of Ancient Civilization with double curriculum study Classical Archaeology🇨🇿 NMgr. | Faculty of Arts
- South East European Studies +1🇨🇿 NMgr. | Faculty of Arts
- Geology with specialisation in Geoarchaeology🇨🇿 NMgr. | Faculty of Science
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Humanities and Social Sciences🇨🇿 Bc. | Faculty of Humanities
- South East European Studies with specialisation in South Slavic Studies🇨🇿 Bc. | Faculty of Arts
- Archaelogy of Prehistory and Middle Ages +1🇨🇿 Bc. | Faculty of Arts
- Archaelogy of Prehistory and Middle Ages with double curriculum study Ethnology and Cultural Anthropology🇨🇿 NMgr. | Faculty of Arts
- Ethnology and Cultural Anthropology with double curriculum study Archaelogy of Prehistory and Middle Ages🇨🇿 NMgr. | Faculty of Arts
- History – General History with specialisation in International Relations in the Context of Contemporary History with double curriculum study Archaelogy of Prehistory and Middle Ages🇨🇿 NMgr. | Faculty of Arts
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Central European Studies with specialisation in Hungarian Studies with double curriculum study South East European Studies🇨🇿 NMgr. | Faculty of Arts
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Euroasian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies +1🇨🇿 NMgr. | Faculty of Social Sciences