- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Teacher Education of Czech Language and Literature for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Arts
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Mathematics for Information Technologies🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Geobiology🇨🇿 NMgr. | Faculty of Science
- Germanic and North European Studies with specialisation in Scandinavian Studies with double curriculum study Ethnology and Cultural Anthropology🇨🇿 Bc. | Faculty of Arts
- Film Studies with double curriculum study Ethnology and Cultural Anthropology🇨🇿 Bc. | Faculty of Arts
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- Teacher Training For Primary Schools🇨🇿 Mgr. | Faculty of Education
- History of Christian Art +1🇨🇿 Bc. | Catholic Theological Faculty
- Communication Studies🇨🇿 Bc. | Faculty of Social Sciences
- Communication Studies with specialisation in Media Studies🇨🇿 Bc. | Faculty of Social Sciences
- Communication Studies with specialisation in Journalism🇨🇿 Bc. | Faculty of Social Sciences
- Communication Studies with specialisation in Marketing Communication and Public Relations🇨🇿 Bc. | Faculty of Social Sciences
- Geoinformatics, Cartography and Remote Sensing🇨🇿 NMgr. | Faculty of Science
- Social Medicine +1🇨🇿 PhD. | Faculty of Medicine in Pilsen
- Mathematical and computer modeling +1🇨🇿 PhD. | Faculty of Mathematics and Physics
- Mathematical Analysis🇨🇿 NMgr. | Faculty of Mathematics and Physics