- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- International Relations🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Public Administration and Record Management +1🇨🇿 NMgr. | Faculty of Arts
- Sociology with specialisation in Sociology, Public and Politics🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Social Anthropology and Qualitative Research🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Applied Research and Its Methodology🇨🇿 NMgr. | Faculty of Social Sciences
- Media and Area studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Russian Language and Literature🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in Dutch Studies with double curriculum study South East European Studies with specialisation in South Slavic Studies🇨🇿 Bc. | Faculty of Arts
- Germanic and North European Studies with specialisation in Dutch Studies with double curriculum study South East European Studies with specialisation in Albanian Studies🇨🇿 Bc. | Faculty of Arts
- Regional and Political Geography🇨🇿 PhD. | Faculty of Science
- Social Geography and Regional Development🇨🇿 PhD. | Faculty of Science
- History with double curriculum study South East European Studies with specialisation in Albanian Studies🇨🇿 Bc. | Faculty of Arts
- Intercultural Communication: Translation and Interpreting with specialisation in French for Translation and Interpreting with double curriculum study South East European Studies with specialisation in Romanian Studies🇨🇿 Bc. | Faculty of Arts
- East European Studies with specialisation in Russian with double curriculum study South East European Studies with specialisation in South Slavic Studies🇨🇿 Bc. | Faculty of Arts
- Greek and Latin Studies with specialisation in Modern Greek Language and Literature with double curriculum study South East European Studies with specialisation in Romanian Studies🇨🇿 Bc. | Faculty of Arts