- Evolutionary Biology🇨🇿 NMgr. | Faculty of Science
- Mathematical Analysis🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Web and Data Oriented Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in General Computer Science🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Artificial Intelligence🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematical Structures🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Corporate Strategy and Finance in Europe🇬🇧 NMgr. | Faculty of Social Sciences
- International Security Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Peace and Conflict Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Strategic and War Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Global and Regional Security🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Security, Technology and Society🇨🇿 NMgr. | Faculty of Social Sciences
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- General Mathematics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Bioinformatics🇨🇿 Bc. | Faculty of Science
- Computer Science with specialisation in Programming and Software Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Systems Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Master in Economic Research🇨🇿 NMgr. | Faculty of Social Sciences
- Social Sciences🇬🇧 Bc. | Faculty of Social Sciences
- History and Area Studies🇬🇧 Bc. | Faculty of Social Sciences
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Czech-German Studies🇨🇿 Bc. | Faculty of Social Sciences
- Computational Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Mathematical Modelling in Physics and Technology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Teacher Education of Geography for Upper Secondary Schools with double curriculum study Teacher Education of Biology for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Parasitology and Infection Biology🇬🇧 NMgr. | Faculty of Science
- Germanic and North European Studies with specialisation in Scandinavian Studies with double curriculum study Logic🇨🇿 Bc. | Faculty of Arts
- Intercultural Communication: Translation and Interpreting with specialisation in English for Translation and Interpreting with double curriculum study Logic🇨🇿 Bc. | Faculty of Arts
- Mathematics for Information Technologies🇨🇿 NMgr. | Faculty of Mathematics and Physics