- Mathematical Modelling in Physics and Technology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computational Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Geobiology🇨🇿 NMgr. | Faculty of Science
- Geology with specialisation in Geology🇨🇿 NMgr. | Faculty of Science
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Reproduction and Developmental Biology🇨🇿 NMgr. | Faculty of Science
- Science🇬🇧 Bc. | Faculty of Science
- Immunology🇨🇿 NMgr. | Faculty of Science
- Financial Mathematics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Management of Natural Resources🇨🇿 Bc. | Faculty of Science
- Computer Science with specialisation in General Computer Science +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Programming and Software Development +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Systems Programming +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Web and Data Oriented Programming +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Adult education and educational management +1🇨🇿 NMgr. | Faculty of Education
- Hydrology and Hydrogeology🇨🇿 Bc. | Faculty of Science
- Geology with specialisation in Geodynamics🇨🇿 NMgr. | Faculty of Science
- Geology with specialisation in Geochemistry🇨🇿 NMgr. | Faculty of Science
- Geology with specialisation in Environmental Geology🇨🇿 NMgr. | Faculty of Science
- Atmospheric physics, meteorology and climatology +1🇨🇿 PhD. | Faculty of Mathematics and Physics