- Computer Science with specialisation in General Computer Science🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Web and Data Oriented Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Computer Science with specialisation in Computer Graphics, Vision and Game Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Programming and Software Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Demography with specialisation in Demography with Economics🇨🇿 Bc. | Faculty of Science
- Demography with specialisation in Demography with Sociology🇨🇿 Bc. | Faculty of Science
- Demography with specialisation in Demography with Social geography🇨🇿 Bc. | Faculty of Science
- Demography with specialisation in Demography with History🇨🇿 Bc. | Faculty of Science
- Demography with specialisation in Demography with Public and social policy🇨🇿 Bc. | Faculty of Science
- Applied Geography with specialisation in Social Geography and Geoinformatics🇨🇿 Bc. | Faculty of Science
- Computer Science with specialisation in Systems Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Sociology, Public and Politics🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Social Anthropology and Qualitative Research🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Applied Research and Its Methodology🇨🇿 NMgr. | Faculty of Social Sciences
- Computer Science with specialisation in Artificial Intelligence🇨🇿 Bc. | Faculty of Mathematics and Physics
- French Studies with double curriculum study Empirical and Comparative Linguistics🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in Scandinavian Studies with double curriculum study Empirical and Comparative Linguistics🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in Dutch Studies with double curriculum study Empirical and Comparative Linguistics🇨🇿 NMgr. | Faculty of Arts
- Clinical and Toxicological Analysis🇨🇿 NMgr. | Faculty of Science
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Geobiology🇨🇿 NMgr. | Faculty of Science
- Computational Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- General Mathematics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematics for Information Technologies🇨🇿 Bc. | Faculty of Mathematics and Physics
- Bioinformatics🇨🇿 NMgr. | Faculty of Science
- Computer Science🇨🇿 Bc. | Faculty of Mathematics and Physics
- Master in Economic Research🇨🇿 NMgr. | Faculty of Social Sciences