- Computer Science with specialisation in Computer Graphics, Vision and Game Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in General Computer Science🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Programming and Software Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Systems Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science🇨🇿 Bc. | Faculty of Mathematics and Physics
- Information and Communication Technology for Teacher Education +1🇨🇿 Bc. | Faculty of Education
- Bioinformatics🇨🇿 Bc. | Faculty of Science
- Chemistry for Teacher Education with double curriculum study Mathematics for Teacher Education🇨🇿 Bc. | Faculty of Science
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Economics and Finance🇨🇿 Bc. | Faculty of Social Sciences
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Mathematics for Teacher Education🇨🇿 Bc. | Faculty of Education
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨 🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Inorganic Chemistry🇨🇿 PhD. | Faculty of Science
- Animal Physiology🇨🇿 PhD. | Faculty of Science
- International Security Studies with specialisation in Security, Technology and Society🇨🇿 NMgr. | Faculty of Social Sciences
- Computational mathematics +1🇨🇿 PhD. | Faculty of Mathematics and Physics
- Public and Social Policy🇨🇿 PhD. | Faculty of Social Sciences
