- South East European Studies with specialisation in South Slavic Studies🇨🇿 Bc. | Faculty of Arts
- Astronomy and Astrophysics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Germanic and North European Studies with specialisation in Dutch Studies with double curriculum study South East European Studies with specialisation in South Slavic Studies🇨🇿 Bc. | Faculty of Arts
- East European Studies with specialisation in Russian with double curriculum study South East European Studies with specialisation in South Slavic Studies🇨🇿 Bc. | Faculty of Arts
- Central European Studies with specialisation in Hungarian Studies +1🇨🇿 Bc. | Faculty of Arts
- South East European Studies with specialisation in South Slavic Studies with double curriculum study Intercultural Communication: Translation and Interpreting with specialisation in Russian for Translation and Interpreting🇨🇿 Bc. | Faculty of Arts
- Particle and Nuclear Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- History and Area Studies🇬🇧 Bc. | Faculty of Social Sciences
- Theoretical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Atmospheric Physics, Meteorology and Climatology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Analytical Chemistry🇨🇿 NMgr. | Faculty of Science
- Central European Studies with specialisation in Slovak Studies🇨🇿 NMgr. | Faculty of Arts
- South East European Studies🇨🇿 Bc. | Faculty of Arts
- Gender Studies +1🇨🇿 NMgr. | Faculty of Humanities
- Applied Geology with specialisation in Engineering geology🇨🇿 NMgr. | Faculty of Science
- Mathematical and Computational Modelling in Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Master in Economic Research🇨🇿 NMgr. | Faculty of Social Sciences