- Physical Education and Sport🇬🇧 NMgr. | Faculty of Physical Education and Sport
- Applied Sport Science🇨🇿 NMgr. | Faculty of Physical Education and Sport
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences
- General Medicine🇨🇿 Mgr. | Third Faculty of Medicine
- Teacher Education of Physical Education for Upper Secondary Schools +1🇨🇿 NMgr. | Faculty of Physical Education and Sport
- Teacher Education of Physical Education for Upper Secondary Schools with double curriculum study Teacher Education of Geography for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Physical Education and Sport
- Teacher Education of Physical Education for Upper Secondary Schools with double curriculum study Teacher Education of Mathematics for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Physical Education and Sport
- Coach🇨🇿 Bc. | Faculty of Physical Education and Sport
- Teacher Education of Physical Education and Military Physical Education for Upper Secondary School +1🇨🇿 NMgr. | Faculty of Physical Education and Sport
- Geobiology🇨🇿 NMgr. | Faculty of Science
- Social Work🇨🇿 Bc. | Faculty of Arts
- Pedagogy of Pre-school Age🇨🇿 NMgr. | Faculty of Education
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Public and Social Policy🇨🇿 NMgr. | Faculty of Social Sciences
- General Medicine🇨🇿 Mgr. | Second Faculty of Medicine
- Gender Studies +1🇨🇿 NMgr. | Faculty of Humanities
- Special Education +1🇨🇿 NMgr. | Faculty of Education
- Military Physical Education, Physical Education and Sport for Teacher Education +1🇨🇿 Bc. | Faculty of Physical Education and Sport
- Speech Therapy +1🇨🇿 NMgr. | Faculty of Education
- Social and Cultural Ecology🇨🇿 NMgr. | Faculty of Humanities