- Teacher Education of Czech Language and Literature for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Arts
- Comparative Literature +1🇨🇿 NMgr. | Faculty of Arts
- Comparative Literature — East European Studies🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature🇨🇿 NMgr. | Faculty of Arts
- Special Education🇨🇿 NMgr. | Faculty of Education
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- Geobiology🇨🇿 NMgr. | Faculty of Science
- Evolutionary Biology🇨🇿 NMgr. | Faculty of Science
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- History of Christian Art🇨🇿 NMgr. | Catholic Theological Faculty
- Politics, Philosophy and Economics🇬🇧 Bc. | Faculty of Social Sciences
- Mathematical Modelling🇨🇿 Bc. | Faculty of Mathematics and Physics
- Chemistry for Teacher Education with double curriculum study Physics for Teacher Education🇨🇿 Bc. | Faculty of Science
- Geology with specialisation in Geodynamics🇨🇿 NMgr. | Faculty of Science
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Chemistry and Physics of Materials🇨🇿 Bc. | Faculty of Science
- Chemistry🇨🇿 Bc. | Faculty of Science
- General Mathematics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences