- International Master in Security, Intelligence and Strategic Studies (IMSISS)🇬🇧 NMgr. | Faculty of Social Sciences
- Gender Studies +1🇨🇿 NMgr. | Faculty of Humanities
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- International Relations🇨🇿 NMgr. | Faculty of Social Sciences
- Particle and Nuclear Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Politics, Philosophy and Economics🇬🇧 Bc. | Faculty of Social Sciences
- Catholic Theology🇨🇿 Mgr. | Catholic Theological Faculty
- International Security Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Peace and Conflict Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Strategic and War Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Global and Regional Security🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Security, Technology and Society🇨🇿 NMgr. | Faculty of Social Sciences
- Music Education for Teacher Education with double curriculum study Choral Singing for Teacher Education🇨🇿 Bc. | Faculty of Education
- Choral Singing for Teacher Education with double curriculum study Music Education for Teacher Education🇨🇿 Bc. | Faculty of Education
- Optics and Optoelectronics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Political Science and International Relations🇨🇿 Bc. | Faculty of Social Sciences
- Clinical and Toxicological Analysis🇨🇿 Bc. | Faculty of Science
- Analytical Chemistry🇨🇿 NMgr. | Faculty of Science
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- History of Christian Art🇨🇿 Bc. | Catholic Theological Faculty
- History of European Culture🇨🇿 NMgr. | Catholic Theological Faculty
- Astronomy and Astrophysics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Political Theories🇨🇿 NMgr. | Faculty of Arts
- History🇨🇿 Bc. | Faculty of Arts
- History – Economic and Social History🇨🇿 NMgr. | Faculty of Arts
- Chemistry for Teacher Education🇨🇿 Bc. | Faculty of Science
- Chemistry🇨🇿 Bc. | Faculty of Science
- Medicinal Chemistry🇨🇿 Bc. | Faculty of Science
- Chemistry and Physics of Materials🇨🇿 Bc. | Faculty of Science