- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Optics and Optoelectronics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physics of Condensed Matter and Materials🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Macromolecular Chemistry🇨🇿 NMgr. | Faculty of Science
- Czech-German Studies🇨🇿 Bc. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Political Science🇨🇿 Bc. | Faculty of Arts
- Organic Chemistry🇨🇿 NMgr. | Faculty of Science
- Medicinal Chemistry🇨🇿 NMgr. | Faculty of Science
- Astronomy and Astrophysics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Physiotherapy🇨🇿 Bc. | Faculty of Physical Education and Sport
- Political Science🇨🇿 NMgr. | Faculty of Social Sciences
- Particle and Nuclear Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Theoretical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physical Chemistry with specialisation in Biophysical Chemistry🇨🇿 NMgr. | Faculty of Science
- Clinical and Toxicological Analysis🇨🇿 Bc. | Faculty of Science
- Applied physiotherapy🇨🇿 NMgr. | Second Faculty of Medicine
- Sociology🇨🇿 NMgr. | Faculty of Arts
- Applied Geology with specialisation in Engineering geology🇨🇿 NMgr. | Faculty of Science
- Applied Geology with specialisation in Applied geophysics🇨🇿 NMgr. | Faculty of Science
- Public and Social Policy🇨🇿 NMgr. | Faculty of Social Sciences
- Media Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Physical Chemistry with specialisation in Physical chemistry🇨🇿 NMgr. | Faculty of Science
- Physical Chemistry with specialisation in Modelling of chemical properties of nanostructures and biostructures🇨🇿 NMgr. | Faculty of Science
