- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Experimental Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Theoretical Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Corporate Strategy and Finance in Europe🇬🇧 NMgr. | Faculty of Social Sciences
- Economics and Finance with specialisation in Central Banking and Financial Regulation🇨🇿 NMgr. | Faculty of Social Sciences
- Economics and Finance with specialisation in Financial Markets and Data Analysis🇨🇿 NMgr. | Faculty of Social Sciences
- Economics and Finance with specialisation in Banking and Corporate Finance🇨🇿 NMgr. | Faculty of Social Sciences
- Economics and Finance with specialisation in Economics of Public Sector and Health Care🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences