- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Geophysics and Planetary Science🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Theoretical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Particle and Nuclear Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Comparative Literature +1🇨🇿 NMgr. | Faculty of Arts
- Comparative Literature — East European Studies🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature🇨🇿 NMgr. | Faculty of Arts
- Immunology🇨🇿 NMgr. | Faculty of Science
- Bioinformatics🇨🇿 NMgr. | Faculty of Science
- Reproduction and Developmental Biology🇨🇿 NMgr. | Faculty of Science
- Cell Biology🇨🇿 NMgr. | Faculty of Science
- Genetics, Molecular Biology and Virology with specialisation in Virology🇨🇿 NMgr. | Faculty of Science
- Genetics, Molecular Biology and Virology with specialisation in Molecular biology and genetics of prokakaryotic and eukaryotic microorganisms🇨🇿 NMgr. | Faculty of Science
- Genetics, Molecular Biology and Virology with specialisation in Molecular biology and genetics of eukaryotes🇨🇿 NMgr. | Faculty of Science
- Physics of Condensed Matter and Materials🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Mathematical Modelling in Physics and Technology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computer Science - Visual Computing and Game Development🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Applied Geology with specialisation in Engineering geology🇨🇿 NMgr. | Faculty of Science
- Applied Geology with specialisation in Applied geophysics🇨🇿 NMgr. | Faculty of Science
- Mathematical and Computational Modelling in Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Teacher Education of Czech Language and Literature for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Arts
- Czech Language - Specialization Studies — General Linguistics🇨🇿 NMgr. | Faculty of Arts
- General Linguistics — Scandinavian Studies🇨🇿 NMgr. | Faculty of Arts
- Optics and Optoelectronics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Humanities and Social Sciences🇨🇿 Bc. | Faculty of Humanities
- Botany with specialisation in Bryology and lichenology🇨🇿 NMgr. | Faculty of Science
- Botany with specialisation in Mycology🇨🇿 NMgr. | Faculty of Science