- Archaelogy of Prehistory and Middle Ages +1🇨🇿 Bc. | Faculty of Arts
- Genetics, Molecular Biology and Virology with specialisation in Virology🇨🇿 NMgr. | Faculty of Science
- Genetics, Molecular Biology and Virology with specialisation in Molecular biology and genetics of prokakaryotic and eukaryotic microorganisms🇨🇿 NMgr. | Faculty of Science
- Genetics, Molecular Biology and Virology with specialisation in Molecular biology and genetics of eukaryotes🇨🇿 NMgr. | Faculty of Science
- Bioinformatics +1🇨🇿 Bc. | Faculty of Science
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Computer Science with specialisation in Computer Graphics, Vision and Game Development +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Systems Programming +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Artificial Intelligence +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Physics for Teacher Education with double curriculum study Computer Science for Teacher Education🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematics for Teacher Education with double curriculum study Computer Science for Teacher Education +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Teacher Education of Mathematics for Upper Secondary Schools with double curriculum study Teacher Education of Computer Science for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Logic🇨🇿 Bc. | Faculty of Arts
- Computer Science - Artificial Intelligence🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Teacher Education of Geography for Upper Secondary Schools with double curriculum study Teacher Education of Biology for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Teacher Education of Biology for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Teacher Education of Chemistry for Upper Secondary Schools with double curriculum study Teacher Education of Biology for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Teacher Education of Geology for Upper Secondary Schools with double curriculum study Teacher Education of Biology for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science