- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Corporate Strategy and Finance in Europe🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Economy and Business🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- Teacher Education of Czech Language and Literature for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature with double curriculum study History - Czech History in European Context🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature with double curriculum study Germanic and North European Studies with specialisation in Scandinavian Studies🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature with double curriculum study Translation Studies with specialisation in Translation Studies: Czech – English🇨🇿 NMgr. | Faculty of Arts
- Czech Language – Specialization Studies🇨🇿 NMgr. | Faculty of Arts
- Czech Language – Specialization Studies with double curriculum study Phonetics🇨🇿 NMgr. | Faculty of Arts
- Czech Language – Specialization Studies with double curriculum study Germanic and North European Studies with specialisation in German Studies🇨🇿 NMgr. | Faculty of Arts
- Czech Language – Specialization Studies with double curriculum study Information, media and book culture🇨🇿 NMgr. | Faculty of Arts
- Czech Language – Specialization Studies with double curriculum study Greek and Latin Studies with specialisation in Latin Language and Literature🇨🇿 NMgr. | Faculty of Arts
- Czech Language – Specialization Studies with double curriculum study General Linguistics🇨🇿 NMgr. | Faculty of Arts
- French Studies with double curriculum study Empirical and Comparative Linguistics🇨🇿 NMgr. | Faculty of Arts
- Hispanian Studies with double curriculum study Czech Language – Specialization Studies🇨🇿 NMgr. | Faculty of Arts
- History - Czech History in European Context with double curriculum study Czech Language and Literature🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in Scandinavian Studies with double curriculum study Empirical and Comparative Linguistics🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in Dutch Studies with double curriculum study Empirical and Comparative Linguistics🇨🇿 NMgr. | Faculty of Arts
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Security Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Peace and Conflict Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Strategic and War Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Global and Regional Security🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Security, Technology and Society🇨🇿 NMgr. | Faculty of Social Sciences
- Animal Physiology🇨🇿 PhD. | Faculty of Science
- Physiotherapy🇨🇿 Bc. | Third Faculty of Medicine