- History of Christian Art🇨🇿 Bc. | Catholic Theological Faculty
- History and Area Studies🇬🇧 Bc. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Geopolitical Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Relations🇨🇿 NMgr. | Faculty of Social Sciences
- Demography with specialisation in Demography with Economics🇨🇿 Bc. | Faculty of Science
- Demography with specialisation in Demography with Sociology🇨🇿 Bc. | Faculty of Science
- Demography with specialisation in Demography with Social geography🇨🇿 Bc. | Faculty of Science
- Demography with specialisation in Demography with History🇨🇿 Bc. | Faculty of Science
- Demography with specialisation in Demography with Public and social policy🇨🇿 Bc. | Faculty of Science
- Teacher Education of Mathematics for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Educational Sciences for Upper Secondary Schools with double curriculum study Teacher Education of Education towards Health for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Educational Sciences for Upper Secondary Schools with double curriculum study Teacher Education of Czech Language for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- French Studies with double curriculum study Empirical and Comparative Linguistics🇨🇿 NMgr. | Faculty of Arts
- Inorganic Chemistry🇨🇿 PhD. | Faculty of Science
- Information Studies and Librarianship +1🇨🇿 Bc. | Faculty of Arts
- Ecology🇨🇿 PhD. | Faculty of Science
- Botany🇨🇿 PhD. | Faculty of Science
- Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨 🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Applied Research and Its Methodology🇨🇿 NMgr. | Faculty of Social Sciences