- Teacher Education of Czech Language and Literature for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Arts
- Comparative Literature +1🇨🇿 NMgr. | Faculty of Arts
- Comparative Literature — East European Studies🇨🇿 NMgr. | Faculty of Arts
- Computational Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Mathematical Modelling in Physics and Technology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Teacher Training For Primary Schools +1🇨🇿 Mgr. | Faculty of Education
- History of European Culture🇨🇿 NMgr. | Catholic Theological Faculty
- Mathematics for Information Technologies +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Experimental Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Theoretical Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Heritage Education and Interpretation🇨🇿 NMgr. | Faculty of Education
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Atmospheric Physics, Meteorology and Climatology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Humanities and Social Sciences🇨🇿 Bc. | Faculty of Humanities
- Mathematical Structures🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computer Science - Discrete Models and Algorithms🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Bioethics +1🇨🇿 PhD. | First Faculty of Medicine
- Algebra, number theory, and mathematical logic +1🇨🇿 PhD. | Faculty of Mathematics and Physics
- Slavic Literature Studies +1🇨🇿 PhD. | Faculty of Arts
- Mathematical Analysis🇨🇿 NMgr. | Faculty of Mathematics and Physics