- Catholic Theology🇨🇿 Mgr. | Catholic Theological Faculty
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Central European Studies with specialisation in Hungarian Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Polish Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Slovak Studies🇨🇿 NMgr. | Faculty of Arts
- History of Christian Art🇨🇿 NMgr. | Catholic Theological Faculty
- History of Art🇨🇿 NMgr. | Faculty of Arts
- Teacher Education of Geography for Upper Secondary Schools with double curriculum study Teacher Education of Biology for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Germanic and North European Studies with specialisation in German Studies with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- Hispanian Studies with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- History with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- History with double curriculum study Middle Eastern Studies with specialisation in Iranian Studies🇨🇿 Bc. | Faculty of Arts
- History with double curriculum study Middle Eastern Studies with specialisation in Turkish Studies🇨🇿 Bc. | Faculty of Arts
- East European Studies with specialisation in Latvian with double curriculum study Middle Eastern Studies with specialisation in Iranian Studies🇨🇿 Bc. | Faculty of Arts
- East European Studies with specialisation in Russian with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- Hebrew and Jewish Studies with double curriculum study Middle Eastern Studies with specialisation in Iranian Studies🇨🇿 Bc. | Faculty of Arts
- Ethnology and Cultural Anthropology with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- Greek and Latin Studies with specialisation in History of Ancient Civilization with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts