- New Media Studies🇨🇿 NMgr. | Faculty of Arts
- Political Science and International Relations🇨🇿 Bc. | Faculty of Social Sciences
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Environmental Protection🇨🇿 NMgr. | Faculty of Science
- Social Geography and Regional Development +1🇨🇿 NMgr. | Faculty of Science
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Teacher Education of Religion and Social Sciences for Upper Secondary Schools🇨🇿 NMgr. | Hussite Theological Faculty
- Landscape and Society🇨🇿 NMgr. | Faculty of Science
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Earth Sciences🇨🇿 Bc. | Faculty of Science
- Physics of Condensed Matter and Materials🇨🇿 NMgr. | Faculty of Mathematics and Physics
- History of Christian Art🇨🇿 Bc. | Catholic Theological Faculty
- History of European Culture +1🇨🇿 Bc. | Catholic Theological Faculty
- Catholic Theology🇨🇿 Mgr. | Catholic Theological Faculty
- Atmospheric Physics, Meteorology and Climatology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Sociology with specialisation in Sociology with Economics🇨🇿 Bc. | Faculty of Arts
- Sociology of Contemporary Societies with specialisation in Anthropology of Space and Mobility🇬🇧 NMgr. | Faculty of Social Sciences
- Management of Natural Resources🇨🇿 Bc. | Faculty of Science