- Physioterapy🇨🇿 Bc. | Second Faculty of Medicine
- Applied physiotherapy🇨🇿 NMgr. | Second Faculty of Medicine
- General Medicine🇨🇿 Mgr. | Second Faculty of Medicine
- Germanic and North European Studies with specialisation in Scandinavian Studies with double curriculum study Logic🇨🇿 Bc. | Faculty of Arts
- Intercultural Communication: Translation and Interpreting with specialisation in English for Translation and Interpreting with double curriculum study Logic🇨🇿 Bc. | Faculty of Arts
- Intercultural Communication: Translation and Interpreting with specialisation in Russian for Translation and Interpreting with double curriculum study Logic🇨🇿 Bc. | Faculty of Arts
- Intercultural Communication: Translation and Interpreting with specialisation in Spanish for Translation and Interpreting with double curriculum study Logic🇨🇿 Bc. | Faculty of Arts
- Greek and Latin Studies with specialisation in Modern Greek Language and Literature with double curriculum study Logic🇨🇿 Bc. | Faculty of Arts
- Philosophy with double curriculum study Logic🇨🇿 Bc. | Faculty of Arts
- Computer Science with specialisation in Programming and Software Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Systems Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Bioinformatics +1🇨🇿 Bc. | Faculty of Science
- Computer Science🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Computer Graphics, Vision and Game Development🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in General Computer Science🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Web and Data Oriented Programming🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science with specialisation in Artificial Intelligence🇨🇿 Bc. | Faculty of Mathematics and Physics
- Physics for Teacher Education with double curriculum study Computer Science for Teacher Education🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematics for Teacher Education with double curriculum study Computer Science for Teacher Education +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematics for Teacher Education with double curriculum study Descriptive Geometry for Teacher Education🇨🇿 Bc. | Faculty of Mathematics and Physics
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences