- International Security Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Peace and Conflict Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Strategic and War Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Global and Regional Security🇨🇿 NMgr. | Faculty of Social Sciences
- International Security Studies with specialisation in Security, Technology and Society🇨🇿 NMgr. | Faculty of Social Sciences
- Corporate Strategy and Finance in Europe🇬🇧 NMgr. | Faculty of Social Sciences
- Hebrew and Jewish Studies🇨🇿 NMgr. | Faculty of Arts
- Germanic and North European Studies with specialisation in German Studies with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- Hispanian Studies with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- History with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- History with double curriculum study Middle Eastern Studies with specialisation in Iranian Studies🇨🇿 Bc. | Faculty of Arts
- History with double curriculum study Middle Eastern Studies with specialisation in Turkish Studies🇨🇿 Bc. | Faculty of Arts
- East European Studies with specialisation in Latvian with double curriculum study Middle Eastern Studies with specialisation in Iranian Studies🇨🇿 Bc. | Faculty of Arts
- East European Studies with specialisation in Russian with double curriculum study Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- Geopolitical Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Economics and Finance🇨🇿 Bc. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Geotechnology🇨🇿 Bc. | Faculty of Science
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Economic Research🇨🇿 NMgr. | Faculty of Social Sciences
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Hydrology and Hydrogeology🇨🇿 Bc. | Faculty of Science