- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Environmental Protection +1🇨🇿 NMgr. | Faculty of Science
- Social and Cultural Ecology🇨🇿 NMgr. | Faculty of Humanities
- Political Science and Public Policy🇨🇿 Bc. | Faculty of Social Sciences
- Public and Social Policy🇨🇿 NMgr. | Faculty of Social Sciences
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Sociology🇨🇿 NMgr. | Faculty of Arts
- Sociology with specialisation in Sociology🇨🇿 Bc. | Faculty of Arts
- Sociology with specialisation in Sociology with Economics🇨🇿 Bc. | Faculty of Arts
- Chinese Studies🇨🇿 Bc. | Faculty of Arts
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Chemistry for Teacher Education🇨🇿 Bc. | Faculty of Science
- Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Management of Natural Resources🇨🇿 Bc. | Faculty of Science
- Gender Studies +1🇨🇿 NMgr. | Faculty of Humanities
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences