- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Information and Communication Technology for Teacher Education +1🇨🇿 Bc. | Faculty of Education
- Biophysics and Chemical Physics with specialisation in Experimental Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Theoretical Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Cell Biology🇨🇿 NMgr. | Faculty of Science
- Microbiology🇨🇿 NMgr. | Faculty of Science
- Protistology🇨🇿 NMgr. | Faculty of Science
- Chemistry for Teacher Education with double curriculum study Physics for Teacher Education +1🇨🇿 Bc. | Faculty of Science
- Physics for Teacher Education with double curriculum study Computer Science for Teacher Education🇨🇿 Bc. | Faculty of Mathematics and Physics
- Physics for Teacher Education with double curriculum study Mathematics for Teacher Education🇨🇿 Bc. | Faculty of Mathematics and Physics
- Biology for Teacher Education with double curriculum study Physics for Teacher Education🇨🇿 Bc. | Faculty of Science
- Optics and Optoelectronics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Geology with specialisation in Geoarchaeology🇨🇿 NMgr. | Faculty of Science
- Genetics, Molecular Biology and Virology with specialisation in Molecular biology and genetics of prokakaryotic and eukaryotic microorganisms🇨🇿 NMgr. | Faculty of Science
- Genetics, Molecular Biology and Virology with specialisation in Molecular biology and genetics of eukaryotes🇨🇿 NMgr. | Faculty of Science
- Information Studies and Librarianship🇨🇿 Bc. | Faculty of Arts
- Inorganic Chemistry🇨🇿 NMgr. | Faculty of Science
- Physical Chemistry with specialisation in Biophysical Chemistry🇨🇿 NMgr. | Faculty of Science
- English Language and Literature in a Didactic Perspective +1🇨🇿 PhD. | Faculty of Education
- Bohemistics for Foreigners🇨🇿 Bc. | Faculty of Arts
- Public Administration and Record Management🇨🇿 NMgr. | Faculty of Arts
- Middle Eastern Studies🇨🇿 Bc. | Faculty of Arts
- Middle Eastern Studies with specialisation in Arabic Studies🇨🇿 Bc. | Faculty of Arts
- Middle Eastern Studies with specialisation in Iranian Studies🇨🇿 Bc. | Faculty of Arts
- Middle Eastern Studies with specialisation in Turkish Studies🇨🇿 Bc. | Faculty of Arts
- Electronic Culture and Semiotics🇨🇿 NMgr. | Faculty of Humanities