- Germanic and North European Studies with specialisation in Finnish Studies with double curriculum study History – General History with specialisation in International Relations in the Context of Contemporary History🇨🇿 NMgr. | Faculty of Arts
- Ibero-American Studies with double curriculum study History – General History with specialisation in International Relations in the Context of Contemporary History🇨🇿 NMgr. | Faculty of Arts
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- History🇨🇿 Bc. | Faculty of Arts
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- East European Studies🇨🇿 Bc. | Faculty of Arts
- East European Studies with specialisation in Russian🇨🇿 Bc. | Faculty of Arts
- East European Studies with specialisation in Ukrainian🇨🇿 Bc. | Faculty of Arts
- Religious Studies🇨🇿 NMgr. | Faculty of Arts
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Teacher Education of Mathematics for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Physical Education for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Biology for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Physical Education for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Information and Communication Technology for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Physical Education for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Social Sciences for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Physical Education for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Education towards Health for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Physical Education for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Physical Education for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Mathematics for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Physical Education for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Biology for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Physical Education for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Information and Communication Technology for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Physical Education for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Social Sciences for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Physical Education for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Education towards Health for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences