- Earth Sciences🇨🇿 Bc. | Faculty of Science
- Geology with specialisation in Geoarchaeology🇨🇿 Bc. | Faculty of Science
- Management of Natural Resources🇨🇿 Bc. | Faculty of Science
- General Nursing🇨🇿 Bc. | Faculty of Medicine in Hradec Králové
- Psychology🇨🇿 NMgr. | Faculty of Arts
- Applied Geology with specialisation in Engineering geology🇨🇿 NMgr. | Faculty of Science
- Sociology🇨🇿 NMgr. | Faculty of Arts
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- Computer Science - Software Systems🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Social Sciences🇬🇧 Bc. | Faculty of Social Sciences
- General Medicine🇨🇿 Mgr. | Second Faculty of Medicine
- Italian Studies🇨🇿 NMgr. | Faculty of Arts
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Economy and Business🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- Environmental Protection🇨🇿 NMgr. | Faculty of Science
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Bioinformatics🇨🇿 Bc. | Faculty of Science
- Biology🇨🇿 Bc. | Faculty of Science