- Computational Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Atmospheric Physics, Meteorology and Climatology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Ancient Egypt and the Near East🇨🇿 Bc. | Faculty of Arts
- Computer Science with specialisation in Programming and Software Development +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Computer Science - Software Systems🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computer Science - Software and Data Engineering🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Experimental Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physics of Condensed Matter and Materials🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Teacher Education of Mathematics for Lower and Upper Secondary Schools +1🇨🇿 NMgr. | Faculty of Education
- Optics and Optoelectronics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Theoretical Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Teacher Training For Primary Schools🇨🇿 Mgr. | Faculty of Education
- Geobiology🇨🇿 NMgr. | Faculty of Science
- Environmental Protection🇨🇿 NMgr. | Faculty of Science
- Bioinformatics🇨🇿 NMgr. | Faculty of Science
- Experimental Plant Biology with specialisation in Plant Cellular and Molecular Biology🇨🇿 NMgr. | Faculty of Science
- Experimental Plant Biology with specialisation in Plant Ecophysiology🇨🇿 NMgr. | Faculty of Science