- International Masters in Economy, State and Society with specialisation in Economy and Business🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Corporate Strategy and Finance in Europe🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- Demography with specialisation in Demography with Economics🇨🇿 Bc. | Faculty of Science
- Social Sciences🇬🇧 Bc. | Faculty of Social Sciences
- Politics, Philosophy and Economics🇬🇧 Bc. | Faculty of Social Sciences
- Economics and Finance🇨🇿 Bc. | Faculty of Social Sciences
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Religious Studies🇨🇿 Bc. | Faculty of Arts
- Translation Studies with specialisation in Translation Studies: Czech – Spanish with double curriculum study New Media Studies🇨🇿 NMgr. | Faculty of Arts
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- History and Area Studies🇬🇧 Bc. | Faculty of Social Sciences
- Master in Economic Research🇨🇿 NMgr. | Faculty of Social Sciences
- Chemistry for Teacher Education with double curriculum study Physics for Teacher Education🇨🇿 Bc. | Faculty of Science
- Geography for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Chemistry for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Bioinformatics🇨🇿 Bc. | Faculty of Science