- Social Sciences🇬🇧 Bc. | Faculty of Social Sciences
- Politics, Philosophy and Economics🇬🇧 Bc. | Faculty of Social Sciences
- General Mathematics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematical Analysis🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Reproduction and Developmental Biology🇨🇿 NMgr. | Faculty of Science
- History and Area Studies🇬🇧 Bc. | Faculty of Social Sciences
- Economics and Finance🇨🇿 Bc. | Faculty of Social Sciences
- Geography and Cartography🇨🇿 Bc. | Faculty of Science
- Applied Geography with specialisation in Physical Geography and Geoinformatics🇨🇿 Bc. | Faculty of Science
- Applied Geography with specialisation in Social Geography and Geoinformatics🇨🇿 Bc. | Faculty of Science
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Economy and Business🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Teacher Training For Primary Schools +1🇨🇿 Mgr. | Faculty of Education
- Information Studies and Librarianship🇨🇿 Bc. | Faculty of Arts
- Organic Chemistry🇨🇿 NMgr. | Faculty of Science
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Central European Studies with specialisation in Hungarian Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Hungarian Studies and Slovak Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Hungarian Studies with double curriculum study South East European Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Polish Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Slovak Studies with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- Education +1🇨🇿 Bc. | Faculty of Education
- Didactics of Biology +1🇨🇿 PhD. | Faculty of Education
- Particle and Nuclear Physics🇨🇿 PhD. | Faculty of Mathematics and Physics
