- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Czech Language and Literature with double curriculum study History - Czech History in European Context🇨🇿 NMgr. | Faculty of Arts
- Political Theories with double curriculum study History - Czech History in European Context🇨🇿 NMgr. | Faculty of Arts
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Teacher Education of Geography for Upper Secondary Schools with double curriculum study Teacher Education of Biology for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Sociology with specialisation in Sociology, Public and Politics🇨🇿 NMgr. | Faculty of Social Sciences
- Public and Social Policy Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Communication Studies with specialisation in Media Studies🇨🇿 Bc. | Faculty of Social Sciences
- Communication Studies with specialisation in Journalism🇨🇿 Bc. | Faculty of Social Sciences
- Communication Studies with specialisation in Marketing Communication and Public Relations🇨🇿 Bc. | Faculty of Social Sciences
- Czech Language and Literature for Teacher Education🇨🇿 Bc. | Faculty of Arts
- Teacher Education of Czech Language and Literature for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature🇨🇿 NMgr. | Faculty of Arts
- Czech Language and Literature with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- French Studies with double curriculum study Comparative Literature🇨🇿 NMgr. | Faculty of Arts
- Physical Geography and Geoecology🇨🇿 NMgr. | Faculty of Science
- English Language and Linguistics with double curriculum study Interpreting Studies with specialisation in Interpreting : Czech – French🇨🇿 NMgr. | Faculty of Arts
- Landscape and Society🇨🇿 NMgr. | Faculty of Science
- Political Theories🇨🇿 NMgr. | Faculty of Arts