- Politics, Philosophy and Economics🇬🇧 Bc. | Faculty of Social Sciences
- Computational Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Financial and Insurance Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Probability, Mathematical Statistics and Econometrics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Probability, Mathematical Statistics and Econometrics with specialisation in Econometrics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Catholic Theology +1🇨🇿 Mgr. | Catholic Theological Faculty
- Theological Studies🇨🇿 Bc. | Catholic Theological Faculty
- Psychology🇨🇿 NMgr. | Faculty of Arts
- Bioinformatics🇨🇿 NMgr. | Faculty of Science
- Mathematics for Information Technologies🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Economics and Finance with specialisation in Financial Markets and Data Analysis🇨🇿 NMgr. | Faculty of Social Sciences
- Computer Science - Artificial Intelligence🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computer Science - Language Technologies and Computational Linguistics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Mathematical Modelling in Physics and Technology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Political Science and International Relations🇨🇿 Bc. | Faculty of Social Sciences
- Political Science and Public Policy🇨🇿 Bc. | Faculty of Social Sciences
- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Social Sciences🇬🇧 Bc. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in History and Society🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences