- Particle and Nuclear Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Theoretical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Geology with specialisation in Geodynamics🇨🇿 NMgr. | Faculty of Science
- Dentistry🇨🇿 Mgr. | First Faculty of Medicine
- Surgery +1🇨🇿 PhD. | Faculty of Medicine in Pilsen
- TEMA+ European Societies: Heritage and Development / Sociétés européennes: patrimoine et développement🇬🇧 NMgr. | Faculty of Arts
- Russian Studies (study programme named after Boris Nemtsov)🇷🇺 NMgr. | Faculty of Arts
- Asian Studies with specialisation in Vietnamese Studies🇨🇿 Bc. | Faculty of Arts
- Intensive Care🇨🇿 NMgr. | Third Faculty of Medicine
- Optics and Optoelectronics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Neurosciences +1🇨🇿 PhD. | Second Faculty of Medicine
- Experimental Surgery +1🇨🇿 PhD. | First Faculty of Medicine