- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Experimental Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics with specialisation in Theoretical Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physics of Condensed Matter and Materials🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Mathematical and Computational Modelling in Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Evolutionary Biology🇨🇿 NMgr. | Faculty of Science
- Protistology🇨🇿 NMgr. | Faculty of Science
- Botany with specialisation in Algology and algal ecology🇨🇿 NMgr. | Faculty of Science
- Optics and Optoelectronics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biophysics and Chemical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Biochemistry +1🇨🇿 Bc. | Faculty of Science
- Parasitology🇨🇿 NMgr. | Faculty of Science
- Geology with specialisation in Geodynamics🇨🇿 NMgr. | Faculty of Science
- Teacher Education of Chemistry for Upper Secondary Schools with double curriculum study Teacher Education of Physics for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Teacher Education of Physics for Upper Secondary Schools with double curriculum study Teacher Education of Mathematics for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Organic Chemistry🇨🇿 NMgr. | Faculty of Science
- Medicinal Chemistry🇨🇿 NMgr. | Faculty of Science
- Macromolecular Chemistry🇨🇿 NMgr. | Faculty of Science
- Clinical and Toxicological Analysis🇨🇿 Bc. | Faculty of Science
- Theoretical Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Zoology with specialisation in Animal Evolutionary Genetics🇨🇿 NMgr. | Faculty of Science
- Zoology with specialisation in Invertebrate Zoology🇨🇿 NMgr. | Faculty of Science
- Paediatric Nursing🇨🇿 Bc. | Second Faculty of Medicine
- General Nursing🇨🇿 Bc. | Second Faculty of Medicine
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Psychology🇨🇿 Bc. | Faculty of Arts
- Botany with specialisation in Mycology🇨🇿 NMgr. | Faculty of Science
- Particle and Nuclear Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Genetics, Molecular Biology and Virology with specialisation in Virology🇨🇿 NMgr. | Faculty of Science