- Economics and Finance with specialisation in Financial Markets and Data Analysis🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- German and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Teacher Education of English Language for Lower and Upper Secondary Schools with double curriculum study Teacher Education of German Language for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of History for Lower and Upper Secondary Schools with double curriculum study Teacher Education of German Language for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of German Language for Lower and Upper Secondary Schools +1🇨🇿 NMgr. | Faculty of Education
- Teacher Education of German Language for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Mathematics for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of German Language for Lower and Upper Secondary Schools with double curriculum study Teacher Education of English Language for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of German Language for Lower and Upper Secondary Schools with double curriculum study Teacher Education of History for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of German Language for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Social Sciences for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of German Language for Lower and Upper Secondary Schools with double curriculum study Teacher Education of Czech Language for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Chemistry for Lower and Upper Secondary Schools with double curriculum study Teacher Education of German Language for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Teacher Education of Social Sciences for Lower and Upper Secondary Schools with double curriculum study Teacher Education of German Language for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Evolutionary Biology🇨🇿 NMgr. | Faculty of Science
- Geobiology🇨🇿 NMgr. | Faculty of Science
- General Medicine🇨🇿 Mgr. | Third Faculty of Medicine
- English and American Studies🇨🇿 Bc. | Faculty of Arts
- Dentistry🇨🇿 Mgr. | Faculty of Medicine in Pilsen
- Bioinformatics🇨🇿 NMgr. | Faculty of Science
- Reproduction and Developmental Biology🇨🇿 NMgr. | Faculty of Science
- Teacher Education of Geography for Upper Secondary Schools with double curriculum study Teacher Education of Biology for Upper Secondary Schools🇨🇿 NMgr. | Faculty of Science
- Sociology with specialisation in Sociology, Public and Politics🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Social Anthropology and Qualitative Research🇨🇿 NMgr. | Faculty of Social Sciences
- Sociology with specialisation in Applied Research and Its Methodology🇨🇿 NMgr. | Faculty of Social Sciences
- Demography +1🇨🇿 NMgr. | Faculty of Science