- Area Studies with specialisation in Area Studies🇨🇿 Bc. | Faculty of Social Sciences
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Astronomy and Astrophysics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Russian Language and Literature +1🇨🇿 NMgr. | Faculty of Arts
- East European Studies🇨🇿 NMgr. | Faculty of Arts
- East European Studies with specialisation in Lithuanian🇨🇿 NMgr. | Faculty of Arts
- East European Studies with specialisation in Latvian🇨🇿 NMgr. | Faculty of Arts
- East European Studies with specialisation in Latvian with double curriculum study Russian Language and Literature🇨🇿 NMgr. | Faculty of Arts
- East European Studies with specialisation in Russian🇨🇿 NMgr. | Faculty of Arts
- East European Studies with specialisation in Russian with double curriculum study History – General History with specialisation in International Relations in the Context of Contemporary History🇨🇿 NMgr. | Faculty of Arts
- East European Studies with specialisation in Ukrainian🇨🇿 NMgr. | Faculty of Arts
- East European Studies with specialisation in Ukrainian with double curriculum study Interpreting Studies with specialisation in Interpreting : Czech – French🇨🇿 NMgr. | Faculty of Arts
- Comparative Literature — East European Studies🇨🇿 NMgr. | Faculty of Arts
- Empirical and Comparative Linguistics with double curriculum study East European Studies with specialisation in Russian🇨🇿 NMgr. | Faculty of Arts
- Humanities and Social Sciences🇨🇿 Bc. | Faculty of Humanities
- Czech-German Studies🇨🇿 Bc. | Faculty of Social Sciences
- Clinical and Toxicological Analysis🇨🇿 NMgr. | Faculty of Science
- Physical Geography and Geoecology🇨🇿 NMgr. | Faculty of Science
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematical and Computational Modelling in Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Bioinformatics🇨🇿 Bc. | Faculty of Science
- Biology🇨🇿 Bc. | Faculty of Science
- Physics of Condensed Matter and Materials🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Genetics, Molecular Biology and Virology with specialisation in Molecular biology and genetics of eukaryotes🇨🇿 NMgr. | Faculty of Science
- Zoology with specialisation in Animal Evolutionary Genetics🇨🇿 NMgr. | Faculty of Science
- Zoology with specialisation in Invertebrate Zoology🇨🇿 NMgr. | Faculty of Science