- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Mathematical Analysis🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computational Mathematics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Mathematical Modelling in Physics and Technology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Mathematical and Computational Modelling in Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Political Science and International Relations🇨🇿 Bc. | Faculty of Social Sciences
- Reproduction and Developmental Biology🇨🇿 NMgr. | Faculty of Science
- Cell Biology🇨🇿 NMgr. | Faculty of Science
- Genetics, Molecular Biology and Virology with specialisation in Virology🇨🇿 NMgr. | Faculty of Science
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Communication Studies with specialisation in Media Studies🇨🇿 Bc. | Faculty of Social Sciences
- South East European Studies🇨🇿 NMgr. | Faculty of Arts
- History - Czech History in European Context🇨🇿 NMgr. | Faculty of Arts
- Global Migration and Development Studies🇨🇿 NMgr. | Faculty of Science