- History of Christian Art +1🇨🇿 NMgr. | Catholic Theological Faculty
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Central European Studies with specialisation in Hungarian Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Hungarian Studies and Slovak Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Hungarian Studies with double curriculum study South East European Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Polish Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Slovak Studies🇨🇿 NMgr. | Faculty of Arts
- Central European Studies with specialisation in Romani Studies🇨🇿 NMgr. | Faculty of Arts
- Deaf Studies🇨🇿 Bc. | Faculty of Arts
- Physical Education and Sport🇬🇧 NMgr. | Faculty of Physical Education and Sport
- Social Sciences for Teacher Education with double curriculum study Czech Language for Teacher Education🇨🇿 Bc. | Faculty of Education
- Social Sciences for Teacher Education with double curriculum study Physical Education for Teacher Education🇨🇿 Bc. | Faculty of Education
- Social Sciences for Teacher Education with double curriculum study History for Teacher Education🇨🇿 Bc. | Faculty of Education
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Jewish Studies with double curriculum study Hussite Theology +1🇨🇿 Bc. | Hussite Theological Faculty
- Philosophy in Jewish and Christian Contexts with double curriculum study Hussite Theology +1🇨🇿 Bc. | Hussite Theological Faculty
- Hussite Theology +3🇨🇿 Bc. | Hussite Theological Faculty
- Hussite Theology with double curriculum study Jewish Studies +1🇨🇿 Bc. | Hussite Theological Faculty
- Hussite Theology with double curriculum study Philosophy in Jewish and Christian Contexts +1🇨🇿 Bc. | Hussite Theological Faculty
- Hussite Theology with double curriculum study Religious Studies🇨🇿 Bc. | Hussite Theological Faculty
- East European Studies with specialisation in Lithuanian🇨🇿 Bc. | Faculty of Arts