- Oral History - Contemporary History +1🇨🇿 NMgr. | Faculty of Humanities
- Economics and Finance🇨🇿 Bc. | Faculty of Social Sciences
- Astronomy and Astrophysics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Computer Science - Discrete Models and Algorithms🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Computer Science - Theoretical Computer Science🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Science🇬🇧 Bc. | Faculty of Science
- Teacher Education of Information and Communication Technology for Lower and Upper Secondary Schools🇨🇿 NMgr. | Faculty of Education
- Surface and Plasma Physics🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- Logic🇨🇿 Bc. | Faculty of Arts
- General Medicine🇨🇿 Mgr. | Third Faculty of Medicine
- Biochemistry🇨🇿 NMgr. | Faculty of Science
- Master in Economic Research🇨🇿 NMgr. | Faculty of Social Sciences
- Political Science🇨🇿 Bc. | Faculty of Arts