- Chemistry for Teacher Education with double curriculum study Mathematics for Teacher Education🇨🇿 Bc. | Faculty of Science
- Geography for Teacher Education with double curriculum study Mathematics for Teacher Education🇨🇿 Bc. | Faculty of Science
- Physics for Teacher Education with double curriculum study Mathematics for Teacher Education🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematics for Teacher Education with double curriculum study English Language and Literature for Teacher Education🇨🇿 Bc. | Faculty of Mathematics and Physics
- Financial Mathematics🇨🇿 Bc. | Faculty of Mathematics and Physics
- General Mathematics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematics for Information Technologies +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Mathematical Modelling🇨🇿 Bc. | Faculty of Mathematics and Physics
- Humanities and Social Sciences🇨🇿 Bc. | Faculty of Humanities
- Mathematical Analysis🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Physics🇨🇿 Bc. | Faculty of Mathematics and Physics
- Geography for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Molecular Biology and Biochemistry of Organisms🇨🇿 Bc. | Faculty of Science
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Ecological and Evolutionary Biology🇨🇿 Bc. | Faculty of Science
- Chemistry for Teacher Education with double curriculum study Biology for Teacher Education🇨🇿 Bc. | Faculty of Science
- Law and Jurisprudence🇨🇿 Mgr. | Faculty of Law
- Area Studies with specialisation in Balkan, Eurasian and Central European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in German and Austrian Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in North American Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Area Studies with specialisation in West European Studies🇨🇿 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Russian and Eurasian Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Balkan, Eurasian and Central European Studies with specialisation in Balkan and Central European Studies🇬🇧 NMgr. | Faculty of Social Sciences
- Master in Area Studies🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and the International Economy with respect to Economy🇬🇧 NMgr. | Faculty of Social Sciences
- International Masters in Economy, State and Society with specialisation in Politics and Security🇬🇧 NMgr. | Faculty of Social Sciences
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- Mathematical Structures🇨🇿 NMgr. | Faculty of Mathematics and Physics