- Environmental Protection🇨🇿 NMgr. | Faculty of Science
- Child and Adult Nutrition +1🇨🇿 NMgr. | First Faculty of Medicine
- European Politics and Society: Vaclav Havel Joint Master Programme🇬🇧 NMgr. | Faculty of Social Sciences
- History of Art🇨🇿 Bc. | Faculty of Arts
- Archaelogy of Prehistory and Middle Ages +1🇨🇿 Bc. | Faculty of Arts
- Archaelogy of Prehistory and Middle Ages with double curriculum study Ethnology and Cultural Anthropology🇨🇿 NMgr. | Faculty of Arts
- Ethnology and Cultural Anthropology with double curriculum study Archaelogy of Prehistory and Middle Ages🇨🇿 NMgr. | Faculty of Arts
- History – General History with specialisation in International Relations in the Context of Contemporary History with double curriculum study Archaelogy of Prehistory and Middle Ages🇨🇿 NMgr. | Faculty of Arts
- Applied Geobiology🇨🇿 Bc. | Faculty of Science
- Geology with specialisation in Environmental Geology🇨🇿 NMgr. | Faculty of Science
- Clinical and Toxicological Analysis🇨🇿 NMgr. | Faculty of Science
- History of Ancient Civilization +1🇨🇿 PhD. | Faculty of Arts
- Evolutionary Biology🇨🇿 NMgr. | Faculty of Science
- Computer Science with specialisation in Systems Programming +1🇨🇿 Bc. | Faculty of Mathematics and Physics
- Pharmacognosy and Nutraceuticals +1🇨🇿 PhD. | Faculty of Pharmacy in Hradec Králové
- Clinical and social pharmacy +1🇨🇿 PhD. | Faculty of Pharmacy in Hradec Králové
- Social Work🇨🇿 Bc. | Faculty of Arts
- Journalism with specialisation in Sports Journalism🇨🇿 NMgr. | Faculty of Social Sciences
- Anthropological studies with specialisation in Historical anthropology🇨🇿 NMgr. | Faculty of Humanities
- Immunology🇨🇿 NMgr. | Faculty of Science
- Atmospheric Physics, Meteorology and Climatology🇨🇿 NMgr. | Faculty of Mathematics and Physics
- Hydrology and Hydrogeology🇨🇿 NMgr. | Faculty of Science