- Molpher: a software framework for systematic chemical space exploration2013 | Faculty of Mathematics and Physics
- Minimal pharmacophoric elements and fragment hopping, an approach directed at molecular diversity and isozyme selectivity. Design of selective neuronal nitric oxide synthase inhibitors2008 | First Faculty of Medicine
- Discovery of Highly Potent and Selective Inhibitors of Neuronal Nitric Oxide Synthase by Fragment Hopping2009 | First Faculty of Medicine
- Experimental characterization of de novo proteins and their unevolved random-sequence counterparts2023 | Faculty of Science, Central Library of Charles University