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MD simulations
Publication
Class
Person
Publication
Programmes
publication
MD Simulations Shed Light on the Ability of Phosphonate Antisense Nucleic Acids to Hybridize with mRNA and to Elicit RnaseH Activity
2004 |
Faculty of Mathematics and Physics
publication
MD Simulations Highlight the Ability of Antisense Nucleic Acids to Hybridize with the Target mRNA Sequence and Their Potency to Elicit RNase H Activity
2004 |
Faculty of Mathematics and Physics
publication
Concentration and solvent dependent SERS, DFT, MD simulations and molecular docking studies of a thioxothiazolidine derivative with antimicrobial properties
2021 |
Faculty of Pharmacy in Hradec Králové
publication
TD-DFT, DFT, docking, MD simulations, and concentration-dependent SERS investigations of a bioactive trifluoromethyl derivative having human acetylcholinesterase and butyrylcholinesterase in silver colloids
2023 |
Faculty of Pharmacy in Hradec Králové
publication
Palmitoylation modifies transmembrane adaptor protein PAG for ordered lipid environment: A molecular dynamics simulation study
2024 |
Faculty of Science, Central Library of Charles University
publication
Detection and characterization at nM concentration of oligomers formed by hIAPP, Aβ(1-40) and their equimolar mixture using SERS and MD simulations
2018 |
Central Library of Charles University
publication
Computer modeling of polymer stars in variable solvent conditions: a comparison of MD simulations, self-consistent field (SCF) modeling and novel hybrid Monte Carlo SCF approach
2021 |
Faculty of Science
publication
In Silico Identification and Validation of Organic Triazole Based Ligands as Potential Inhibitory Drug Compounds of SARS-CoV-2 Main Protease
+1
2021 |
Faculty of Science
publication
Juno and CD9 protein network organization in oolemma of mouse oocyte
2023 |
Faculty of Science
publication
The role of prolines and glycine in the transmembrane domain of LAT
+1
2021 |
Faculty of Science, Central Library of Charles University
publication
The vertical excitation energies and a lifetime of the two lowest singlet excited states of the conjugated polyenes from C2 to C22: Ab initio, DFT, and semiclassical MNDO-MD simulations
2023 |
Faculty of Mathematics and Physics
publication
QM and QM/MM umbrella sampling MD study of the formation of Hg(II)-thymine bond: Model for evaluation of the reaction energy profiles in solutions with constant pH
2020 |
Faculty of Mathematics and Physics
publication
Specific Inhibition of VanZ-Mediated Resistance to Lipoglycopeptide Antibiotics
2022 |
Faculty of Science
publication
Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties
Publication without faculty affiliation
publication
Amiridine-piperazine hybrids as cholinesterase inhibitors and potential multitarget agents for Alzheimer's disease treatment
2021 |
Publication without faculty affiliation
publication
Anastrozole-mediated modulation of mitochondrial activity by inhibition of mitochondrial permeability transition pore opening: an initial perspective
2023 |
Faculty of Medicine in Hradec Králové
publication
Conformational behavior of comb-like polyelectrolytes in selective solvent: Computer simulation study
2007 |
Faculty of Science
publication
A Computational Study of the Glycine-Rich Loop of Mitochondrial Processing Peptidase
2013 |
Faculty of Science
publication
Deformation mechanisms of Al thin films: In-situ TEM and molecular dynamics study
2022 |
Faculty of Mathematics and Physics
publication
Recognition of 2 ',5 '-linked oligoadenylates by human ribonuclease L: molecular dynamics study
2014 |
Faculty of Mathematics and Physics
publication
Dynamic study of small toxic hydrophobic proteins PepA1 and PepG1 of Staphylococcus aureus
2022 |
Faculty of Science, Central Library of Charles University, First Faculty of Medicine
publication
Ionic Strength and Solution Composition Dictate the Adsorption of Cell-Penetrating Peptides onto Phosphatidylcholine Membranes
2022 |
Faculty of Mathematics and Physics, Faculty of Science
publication
Modulating Aβ aggregation by tyrosol-based ligands: The crucial role of the catechol moiety
2020 |
Central Library of Charles University
publication
Processes in nanostructures si mulated by molecular dynamics
2023 |
Faculty of Mathematics and Physics
publication
Computer modeling of biomolecules
2011 |
Faculty of Mathematics and Physics
publication
Synthesis and structural characterization of monomeric and dimeric peptide nucleic acids prepared by using microwave-promoted multicomponent reactions
2015 |
Faculty of Mathematics and Physics
publication
Functionalization of the Parylene C Surface Enhances the Nucleation of Calcium Phosphate: Combined Experimental and Molecular Dynamics Simulations Approach
2020 |
Faculty of Science, Central Library of Charles University
publication
UV PHOTOFRAGMENTATION OF ISOLATED ALKYL CHLORIDES: VELOCITY MAP IMAGING AND MOLECULE DYNAMICS STUDY
2021 |
Faculty of Mathematics and Physics