- Parallel flexible molecular docking in computational chemistry on high performance computing clusters2015 | Publication without faculty affiliation
- Editorial2020 | Faculty of Mathematics and Physics
- On the cost of iterative computations2020 | Faculty of Mathematics and Physics
- PEMA: a flexible Pipeline for Environmental DNA Metabarcoding Analysis of the 16S/18S ribosomal RNA, ITS, and COI marker genes2020 | Faculty of Science
- An adaptive s-step conjugate gradient algorithm with dynamic basis updating2020 | Faculty of Mathematics and Physics
- FITS library and FITS processorPublication without faculty affiliation
- The Autonomic Cloud2015 | Faculty of Mathematics and Physics
- GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets2020 | Faculty of Mathematics and Physics, Central Library of Charles University
- The Autonomic Cloud: A Vision of Voluntary, Peer-2-Peer Cloud Computing2013 | Faculty of Mathematics and Physics
- Changing Computing Paradigms Towards Power Efficiency2014 | Faculty of Mathematics and Physics
- Contemplating Efficiency of the ROOT File Format for Data Intensive Simulations in Particle Physics2014 | Faculty of Mathematics and Physics
- Procedural Code Representation in a Flow Graph2015 | Faculty of Mathematics and Physics
- HybPhyloMaker: Target Enrichment Data Analysis From Raw Reads to Species Trees2018 | Faculty of Science
- Broadband Dynamic Rupture Modeling With Fractal Fault Roughness, Frictional Heterogeneity, Viscoelasticity and Topography: The 2016 M-w 6.2 Amatrice, Italy Earthquake2022 | Faculty of Mathematics and Physics
- Recent developments in archaeometallurgy2018 | Faculty of Arts